Hypothesis
Cells with trisomy 21 would show Gene Expression Dysregulated Domains, alternating chromosome segments of higher and lower expression, as Letourneau et al. reported in twins discordant for Down syndrome.
What failed
Reanalysis of the original group's stem cell RNA-seq data, and of earlier data from the same twins, did not find these domains. Analysis of Ts65Dn mouse fibroblasts also did not confirm them.
Broken assumption
An extra chromosome 21 causes a genome-wide domain pattern of gene expression changes.
Why
The abstract does not give a cause. The authors question whether the domains exist.
From the published paper: Do et al. F1000Research, 2015. ↗CC BY